Implementations
Implementations and Use Cases
As part of the MOD-CO project the Diversty Wrkbench (DWB) module DiversityDescriptions was extended.
The newly implemented functions demonstrate (a) the usability of the software to manage conceptual and procedural schemes and related content data models and (b) its usability to store and proceed meta-omics data in real life use cases. With this background it is now possible to set up ELNs with certain LIMS functions adapted to specialised lab workflows in meta'omics research.
For the real life use case as described under GBOL 2 Fungi: Microbiome community barcode sequencing see xml zip-archive with MOD-CO SDD- and EML-structured files together with metadata for the GFBio Pansimple DublinCore data pipeline. The DublinCore metadata will be generated via DiversityProjects export.
In parallel, the DWB module DiversityCollection was extended to address meta-omics issues in the analysis tables and procedural hierarchies.
For the real life use case " Soil Ecological Data from Ruma National Park Kenya" see dwbC-namespace-structured xml zip-archive, to be published via GFBio ABCD data pipeline.
As part of two projects, MOD-CO and GFBio, the software tool DiversityImageInspector was established.
A generic workflow for sampling environmental samples is described with use case under Sampling with GPS-enabled smartphone and DiversityImageInspector.
All meta-omics use cases will be integrated in the DWB training environment.
